URl: http://kinemage.biochem.duke.edu/CSHL2002/

user id: CSHL2002

passphrase: CSHL2002

CSHL Crystallography Workshop:

Reprints and Preprints from the Richardson Lab

All-Atom Contacts:

"Visualizing and Quantifying Molecular Goodness-of-Fit: Small-probe Contact Dots with Explicit Hydrogen Atoms."
Paper describing the all-atom methods as manifested in Reduce and Probe software.

"Asparagine and Glutamine: Using Hydrogen Atom Contacts in the Choice of Side-chain Amide Orientation."
Demonstration of all-atoms use in resolving orientation of amides.

"All-Atom Contacts: A New Approach To Structure Validation."
Chapter in upcoming Structural Bioinformatics reviewing methods and progress.

Stereochemistry:

"The Penultimate Rotamer Library."
New rotamer library (the one of stereochemduke.odb)

"Structure Validation by Calpha Geometry: phi, psi and Cbeta Deviation"
Paper currently in press updating Ramachandran plot contours and introducing the Cb deviation measure.

Handy(?) Webpages

Practicum

Practicum PDF

Practicum RTF -- try this one again too!!

Practicum Word Doc

Using Probe with O